SNP Profiles of LCT EEN 90   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCAAAATTCCCTAATTTTTTTTAA
1._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
2._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
3._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
4._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
5._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
6._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
7._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
8._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
9._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
10._LCT_EEN_90
TTCCCC___CCCTAA_TT___
11._LCT_EEN_90
TTCCCC___CCCTAA_TT___
12._LCT_EEN_90
TTCCCC___CCCTAA_TT___
13._LCT_EEN_90
TTCCCC___CCCTAA_TT___
14._LCT_EEN_90
TTCCCC___CCCTAA_TT___
15._LCT_EEN_90
TTCCCC___CCCTAA_TT___
16._LCT_EEN_90
TTCCCC___CCCTAA_TT___
17._LCT_EEN_90
TTCCCC___CCCTAA_TT___
18._LCT_EEN_90
TTCCCC___CCCTAA_TT___
19._LCT_EEN_90
TTCCCC___CCCTAA_TT___
20._LCT_EEN_90
TTCCCC___CCCTAA_TT___
21._LCT_EEN_90
TTCCCC___CCCTAA_TT___
22._GC-08-89-2-12
TT_CCAAAAAAGG_AAAAAAAAAAAA
 1516171819202122232425262728
_Input profile
AAGGCCGGGGCCAACCGGAATTCCGGTT
1._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
2._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
3._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
4._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
5._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
6._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
7._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
8._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
9._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
10._LCT_EEN_90
_GG__GG____AATT_GGTT
11._LCT_EEN_90
_GG__GG____AATT_GGTT
12._LCT_EEN_90
_GG__GG____AATT_GGTT
13._LCT_EEN_90
_GG__GG____AATT_GGTT
14._LCT_EEN_90
_GG__GG____AATT_GGTT
15._LCT_EEN_90
_GG__GG____AATT_GGTT
16._LCT_EEN_90
_GG__GG____AATT_GGTT
17._LCT_EEN_90
_GG__GG____AATT_GGTT
18._LCT_EEN_90
_GG__GG____AATT_GGTT
19._LCT_EEN_90
_GG__GG____AATT_GGTT
20._LCT_EEN_90
_GGCCGGGG____AATT_GGTT
21._LCT_EEN_90
_GG__GG____AATT_GGTT
22._GC-08-89-2-12
AAGGGG_GGGGAAGGGGAATTGGCCTT
 2930313233343536373839404142
_Input profile
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
1._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
2._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
3._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
4._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
5._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
6._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
7._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
8._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
9._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
10._LCT_EEN_90
___GG_AAGG__GG____
11._LCT_EEN_90
___GG_AAGG__GG____
12._LCT_EEN_90
___GG_AAGG__GG____
13._LCT_EEN_90
___GG_AAGG__GG____
14._LCT_EEN_90
___GG_AAGG__GG____
15._LCT_EEN_90
___GG_AAGG__GG____
16._LCT_EEN_90
___GG_AAGG__GG____
17._LCT_EEN_90
___GG_AAGG__GG____
18._LCT_EEN_90
___GG_AAGG__GG____
19._LCT_EEN_90
___GG_AAGG__GG____
20._LCT_EEN_90
___GG_AAGG__GG____
21._LCT_EEN_90
___GG_AAGG__GG____
22._GC-08-89-2-12
AAAAGGGGCCAACCCCAAGGGGGGCCCC
 4344454647484950515253545556
_Input profile
TTTTAGAGAACCAAGGAATTTTCCTTGG
1._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
2._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
3._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
4._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
5._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
6._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
7._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
8._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
9._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
10._LCT_EEN_90
_TT________TTCC__
11._LCT_EEN_90
_TT________TTCC__
12._LCT_EEN_90
_TT________TTCC__
13._LCT_EEN_90
_TT________TTCC__
14._LCT_EEN_90
_TT________TTCC__
15._LCT_EEN_90
_TT________TTCC__
16._LCT_EEN_90
_TT________TTCC__
17._LCT_EEN_90
_TT________TTCC__
18._LCT_EEN_90
_TT________TTCC__
19._LCT_EEN_90
_TT________TTCC__
20._LCT_EEN_90
_TT________TTCC__
21._LCT_EEN_90
_TT________TTCC__
22._GC-08-89-2-12
_AA_AGAAGG_GGAAAAAAGGAAGG
 5758596061626364656667686970
_Input profile
GGCCTTCCCCGGCCAAGGGGAACTCCAA
1._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
2._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
3._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
4._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
5._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
6._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
7._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
8._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
9._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
10._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
11._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
12._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
13._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
14._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
15._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
16._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
17._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
18._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
19._LCT_EEN_90
GG_TTCCCC_CCAAGGGG___AA
20._LCT_EEN_90
-_TTCCCC_CCAAGGGG___GG
21._LCT_EEN_90
__TTCCCC_CCAAGGGG___GG
22._GC-08-89-2-12
CCGGAACCCCGGCCAACCCCAA___
 7172737475767778798081828384
_Input profile
CCCCGGACCCAAACCCCCAACCCTTTCC
1._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
2._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
3._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
4._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
5._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
6._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
7._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
8._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
9._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
10._LCT_EEN_90
CC_____ACCC___CTTTCC
11._LCT_EEN_90
CC_____ACCC___CTTTCC
12._LCT_EEN_90
CC_____ACCC___CTTTCC
13._LCT_EEN_90
CC_____ACCC___CTTTCC
14._LCT_EEN_90
CC_____ACCC___CTTTCC
15._LCT_EEN_90
CC_____ACCC___CTTTCC
16._LCT_EEN_90
CC_____ACCC___CTTTCC
17._LCT_EEN_90
CC_____ACCC___CTTTCC
18._LCT_EEN_90
CC_____ACCC___CTTTCC
19._LCT_EEN_90
CC_____ACCC___CTTTCC
20._LCT_EEN_90
CC_____ACCC___CTTT-
21._LCT_EEN_90
CC_____ACCC___CTTT_
22._GC-08-89-2-12
GGCCGGACCC_ACGGGGAACCAGAA_
 8586878889909192      
_Input profile
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
1._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
2._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
3._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
4._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
5._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
6._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
7._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
8._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
9._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
10._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
11._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
12._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
13._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
14._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
15._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
16._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
17._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
18._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
19._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
20._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
21._LCT_EEN_90
_GG_CCGGCC__X_XX_XX_XX_XX_XX_X
22._GC-08-89-2-12
GG__GGCCGGTTGGX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_90 GC-08-089-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

7._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

8._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

13._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

14._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

15._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

16._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

17._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

20._LCT_EEN_90

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

21._LCT_EEN_90

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

22._LCT_EEN_90 GC-08-89-2-12

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership/ CW
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240